7.3 Viewing Logs

Information helpful for debugging and finding relevant log information.

Log locations include each InnoDBCluster Pod, which are divided into a set of containers. There are two operative containers (mysql, and sidecar) and three initializer containers (initconf, initmysql, and fixdatadir) as described below here:

Table 7.1 Containers associated with an InnoDBCluster Pod

Container Name	Description
sidecar	Initialization, including initial setup of data (initDB) and ongoing maintenance tasks for a specific instance, such as TLS certification updates
mysql	The MySQL Server itself
initconf	It prepares MySQL configuration files for a specific host. For example, to view its ConfigMap: kubectl get cm {cluster_name}-initconf -o json
initmysql	Initializes the MySQL Server, including its data directory.
fixdatadir	Sets appropriate permissions and ownership of the MySQL data directory, upon initialization.

There's also the dynamic MySQL Operator for Kubernetes and MySQL Router pods.

Examples that assume a basic setup as per samples/sample-cluster.yaml which looks like:

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$> kubectl get pods

NAME                                READY   STATUS    RESTARTS   AGE
mycluster-0                         2/2     Running   0          99m
mycluster-1                         2/2     Running   0          99m
mycluster-2                         2/2     Running   0          99m
mycluster-router-6d49485474-ftw9r   1/1     Running   0          97m

$> kubectl get pods --namespace mysql-operator

NAME                              READY   STATUS    RESTARTS   AGE
mysql-operator-586f9f5d5b-7wtgl   1/1     Running   0          3h48m

Viewing operational Pod logs for debugging active operations:

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$> kubectl logs mycluster-0 -c sidecar
...
[2022-04-21 19:15:08,571] sidecar              [INFO    ] My pod is mycluster-0 in default
[2022-04-21 19:15:08,571] sidecar              [INFO    ] Bootstrapping
[2022-04-21 19:15:10,600] sidecar              [INFO    ] Configuring mysql pod default/mycluster-0, configured=None datadir=/var/lib/mysql
[2022-04-21 19:15:10,626] sidecar              [INFO    ] Creating root account root@%
[2022-04-21 19:15:10,670] sidecar              [INFO    ] Creating account mysqladmin@%
[2022-04-21 19:15:10,694] sidecar              [INFO    ] Admin account created
...

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$> kubectl logs mycluster-0 -c mysql

[Entrypoint] MySQL Docker Image 8.0.29-1.2.8-server
2022-04-21T19:15:05.969998Z 0 [Note] [MY-010747] [Server] Plugin 'FEDERATED' is disabled.
2022-04-21T19:15:05.971625Z 0 [Note] [MY-010733] [Server] Shutting down plugin 'MyISAM'
2022-04-21T19:15:05.971700Z 0 [Note] [MY-010733] [Server] Shutting down plugin 'CSV'
[Entrypoint] Starting MySQL 8.0.29-1.2.8-server
2022-04-21T19:15:07.085923Z 0 [Note] [MY-010949] [Server] Basedir set to /usr/.
2022-04-21T19:15:07.085959Z 0 [System] [MY-010116] [Server] /usr/sbin/mysqld (mysqld 8.0.29) starting as process 1
2022-04-21T19:15:07.094129Z 0 [Note] [MY-012366] [InnoDB] Using Linux native AIO
2022-04-21T19:15:07.094464Z 0 [Note] [MY-010747] [Server] Plugin 'FEDERATED' is disabled.
2022-04-21T19:15:07.155815Z 1 [System] [MY-013576] [InnoDB] InnoDB initialization has started.
...

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$> kubectl logs mycluster-router-6d49485474-ftw9r
...
# Bootstrapping MySQL Router instance at '/tmp/mysqlrouter'...
...
## MySQL Classic protocol
- Read/Write Connections: localhost:6446
- Read/Only Connections:  localhost:6447
...

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$> kubectl logs mysql-operator-586f9f5d5b-7wtgl -n mysql-operator
...
2022-04-21 17:06:13: Info: Credential store mechanism is going to be disabled.
2022-04-21 17:06:13: Info: Loading startup files...
2022-04-21 17:06:13: Info: Loading plugins...
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] MySQL Operator/operator.py=2.0.4 timestamp=2022-04-21T14:43:15 kopf=1.31.0 uid=2
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] OPERATOR_VERSION   =2.0.4
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] OPERATOR_EDITION   =community
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] OPERATOR_EDITIONS  =['community', 'enterprise']
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] SHELL_VERSION      =8.0.29
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] DEFAULT_VERSION_TAG=8.0.29
[2022-04-21 17:06:14,758] kopf.activities.star [INFO    ] SIDECAR_VERSION_TAG=8.0.29-2.0.4
...
Incremental state recovery is now in progress.

* Waiting for distributed recovery to finish...
...
[2022-04-21 19:15:54,926] kopf.objects         [INFO    ] cluster probe: status=ClusterDiagStatus.ONLINE 
                                                          online=[<MySQLPod mycluster-0>, <MySQLPod mycluster-1>, <MySQLPod mycluster-2>]
[2022-04-21 19:15:54,930] kopf.objects         [INFO    ] Handler 'on_pod_event' succeeded.
...

Viewing Pods specific to the InnoDBCluster's initialization:

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$> kubectl logs mycluster-0 -c initmysql
...
[Entrypoint] Initializing database
2022-04-21T19:14:40.315937Z 0 [Note] [MY-010949] [Server] Basedir set to /usr/.
2022-04-21T19:14:40.315977Z 0 [System] [MY-013169] [Server] /usr/sbin/mysqld (mysqld 8.0.29) initializing of server in progress as process 19
2022-04-21T19:14:40.317974Z 0 [Note] [MY-010458] [Server] --initialize specified on an existing data directory.
2022-04-21T19:14:40.323039Z 0 [Note] [MY-010938] [Server] Generating a new UUID: 4af9d5b7-c1a7-11ec-9663-0242ac110007.
2022-04-21T19:14:40.329396Z 0 [Note] [MY-012366] [InnoDB] Using Linux native AIO
2022-04-21T19:14:40.330470Z 0 [Note] [MY-010747] [Server] Plugin 'FEDERATED' is disabled.
2022-04-21T19:14:40.398051Z 1 [System] [MY-013576] [InnoDB] InnoDB initialization has started.
...
2022-04-21T19:14:42.103049Z 1 [System] [MY-013577] [InnoDB] InnoDB initialization has ended.
2022-04-21T19:14:42.201557Z 1 [Note] [MY-011088] [Server] Data dictionary initializing version '80023'.
2022-04-21T19:14:43.367575Z 1 [Note] [MY-010007] [Server] Installed data dictionary with version 80023
2022-04-21T19:14:43.678363Z 2 [Note] [MY-011019] [Server] Created system views with I_S version 80023.
...
[Entrypoint] running /docker-entrypoint-initdb.d/initdb-localroot.sql
...
2022-04-21T19:15:01.834127Z 12 [System] [MY-013172] [Server] Received SHUTDOWN from user root. Shutting down mysqld (Version: 8.0.29).
...
2022-04-21T19:15:03.832074Z 0 [System] [MY-010910] [Server] /usr/sbin/mysqld: Shutdown complete (mysqld 8.0.29)
[Entrypoint] Server shut down
[Entrypoint] MySQL init process done. Ready for start up.
[Entrypoint] MYSQL_INITIALIZE_ONLY is set, exiting without starting MySQL...

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$> kubectl logs mycluster-0 -c initconf

2022-04-21 19:14:35: Info: Credential store mechanism is going to be disabled.
2022-04-21 19:14:35: Info: Loading startup files...
2022-04-21 19:14:35: Info: Loading plugins...
2022-04-21T19:14:37 - [INFO] [initmysql] MySQL Operator/init_main.py=2.0.4 timestamp=2022-04-21T14:43:15 kopf=1.31.0 uid=27
2022-04-21T19:14:37 - [INFO] [initmysql] Configuring mysql pod default/mycluster-0, datadir=/var/lib/mysql
total 0
/mnt:
total 8
drwxrwsrwx 3 root mysql 4096 Apr 21 19:14 initconf
drwxrwsrwx 2 root mysql 4096 Apr 21 19:14 mycnfdata

/mnt/initconf:
total 0
lrwxrwxrwx 1 root mysql 19 Apr 21 19:14 00-basic.cnf -> ..data/00-basic.cnf
lrwxrwxrwx 1 root mysql 31 Apr 21 19:14 01-group_replication.cnf -> ..data/01-group_replication.cnf
lrwxrwxrwx 1 root mysql 17 Apr 21 19:14 02-ssl.cnf -> ..data/02-ssl.cnf
lrwxrwxrwx 1 root mysql 19 Apr 21 19:14 99-extra.cnf -> ..data/99-extra.cnf
lrwxrwxrwx 1 root mysql 27 Apr 21 19:14 initdb-localroot.sql -> ..data/initdb-localroot.sql
lrwxrwxrwx 1 root mysql 23 Apr 21 19:14 livenessprobe.sh -> ..data/livenessprobe.sh
lrwxrwxrwx 1 root mysql 16 Apr 21 19:14 my.cnf.in -> ..data/my.cnf.in
lrwxrwxrwx 1 root mysql 24 Apr 21 19:14 readinessprobe.sh -> ..data/readinessprobe.sh

/mnt/mycnfdata:
total 0
2022-04-21T19:14:38 - [INFO] [initmysql] Setting up configurations for mycluster-0 server_id=1000 
                                         report_host=mycluster-0.mycluster-instances.default.svc.cluster.local
2022-04-21T19:14:38 - [INFO] [initmysql] Configuration done

For initconf, you might view their ConfigMap, for example:

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$> kubectl get configmap mycluster-initconf -o yaml

Copied here is the [data] object:

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data:
  00-basic.cnf: |
    # Basic configuration.
    # Do not edit.
    [mysqld]
    plugin_load_add=auth_socket.so
    loose_auth_socket=FORCE_PLUS_PERMANENT
    skip_log_error
    log_error_verbosity=3
  01-group_replication.cnf: |
    # GR and replication related options
    # Do not edit.
    [mysqld]
    log_bin=mycluster
    enforce_gtid_consistency=ON
    gtid_mode=ON
    relay_log_info_repository=TABLE
    skip_slave_start=1
  02-ssl.cnf: |
    # SSL configurations
    # Do not edit.
    [mysqld]
    # ssl-ca=/etc/mysql-ssl/ca.pem
    # ssl-crl=/etc/mysql-ssl/crl.pem
    # ssl-cert=/etc/mysql-ssl/tls.crt
    # ssl-key=/etc/mysql-ssl/tls.key

    loose_group_replication_recovery_use_ssl=1
    # loose_group_replication_recovery_ssl_verify_server_cert=1

    # loose_group_replication_recovery_ssl_ca=/etc/mysql-ssl/ca.pem
    ## loose_group_replication_recovery_ssl_crl=/etc/mysql-ssl/crl.pem
    # loose_group_replication_recovery_ssl_cert=/etc/mysql-ssl/tls.crt
    # loose_group_replication_recovery_ssl_key=/etc/mysql-ssl/tls.key
  99-extra.cnf: |
    # Additional user configurations taken from spec.mycnf in InnoDBCluster.
    # Do not edit directly.
    [mysqld]
    innodb_buffer_pool_size=200M
    innodb_log_file_size=2G
  my.cnf.in: |
    # Server identity related options (not shared across instances).
    # Do not edit.
    [mysqld]
    server_id=@@SERVER_ID@@
    report_host=@@HOSTNAME@@
    datadir=/var/lib/mysql
    loose_mysqlx_socket=/var/run/mysqld/mysqlx.sock
    socket=/var/run/mysqld/mysql.sock
    local-infile=1

    [mysql]
    socket=/var/run/mysqld/mysql.sock

    [mysqladmin]
    socket=/var/run/mysqld/mysql.sock

    !includedir /etc/my.cnf.d